Course

Bash#

• bash lecture

Bacterial Genomics and AMR#

• Bioinformatics Tutorials for Bacterial Genomics

Conda#

• https://mivegec.pages.ird.fr/dainat/malbec-conda/
• https://nbisweden.github.io/workshop-conda/#1

Container#

• https://mivegec.pages.ird.fr/dainat/malbec-containers/ - Unix essential

Git#

• https://mivegec.pages.ird.fr/dainat/malbec-git/ - git essential
• learn-git-basics/ - base de git
• Version Control with Git in Rstudio - Git in Rstudio
• Happy Git and GitHub for the useR - Git oriented for R users
• Version Control with Git - from Software Carpentry
• Git+GitLab crash course - From Astre UMR
• Getting Git Right - Atlassian.com

Python#

• https://southgreenplatform.github.io/training_python/
• National Bioinformatics Infrastructure Sweden (NBIS) python course
• Introduction à la programmation Python pour la biologie - in French

R#

• https://www.royfrancis.com/course-r/lab.html

Reproducible Research#

• https://southgreenplatform.github.io/training_reproducible_research/

Unix#

• https://mivegec.pages.ird.fr/dainat/malbec-unix-basics/ - Unix essential

Miscellaneous#

• Galaxy Training! - Collection of tutorials developed and maintained by the worldwide Galaxy community
• Glittr a web app that list bioinformatics training materials available on GitHub and GitLab
• ERGA Knowledge Hub - A portal gathering and sharing educational materials on genomics and related topics