A small utility to visualise read alignment directly from sam format without reference.
This utility makes it easy to visualise a read alignment against its reference without the reference. Indeed the reference is re-created based on the CIGAR string + the MD tag.
Need a read for testing? Try this one: D00118:252:C86N9ANXX:2:2307:2348:68874 1171 scaffold1 8697 60 125M = 8521 -302 TAAATATGAGTCTGAAGGTGGCTTGAAGGAAAGCATCGGTGCCTGATTCCGGGAACTTTTCCATTGATATTGAGAAGTTTGAATTTGCTAAAAAAAAAGTCAAATTTCCAGACTCTAGGGAAAAA =G@D///C/C0;0@@=BD8@C<F8@D<;00>C.<.</G@0<>0=00C<</@C=111<=E1EBC1<1E:1@::1=1E1>111@>GE1?10E</<1CFE=1:>1GD@E1F;FB@111;EGBBBBBCB AS:i:-21 XN:i:0 XM:i:7 XO:i:0 XG:i:0 NM:i:7 MD:Z:28A0G24G19T16C1C7G23 YS:i:-1 YT:Z:CP NH:i:1